PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5226_iso_4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 105aa    MW: 12235.4 Da    PI: 4.7456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5226_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-1759104351
                                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                                         y GVr ++ +g+++AeIrd + ng   r++lg+f+t+eeAa a+++a++
  cra_locus_5226_iso_4_len_817_ver_3  59 YIGVRKRP-WGKYAAEIRDSTRNG--MRVWLGTFDTEEEAALAYDQAAL 104
                                         89******.**********44465..*********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.49358105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2358104IPR001471AP2/ERF domain
SMARTSM003801.4E-1758105IPR001471AP2/ERF domain
CDDcd000183.82E-2259104No hitNo description
PfamPF008471.8E-1259104IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1859104IPR016177DNA-binding domain
PRINTSPR003678.8E-105970IPR001471AP2/ERF domain
PRINTSPR003678.8E-108298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MDFSYIDYNS PSSSTSQDFD HHFYFTYNDD QEIKSKEPEE ELIFTITKSP QEKKKKGSYI  60
GVRKRPWGKY AAEIRDSTRN GMRVWLGTFD TEEEAALAYD QAALS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1959104651ATERF1
3gcc_A2e-1959104651ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012838903.14e-28PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC82e-25ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLM1B0S21e-27M1B0S2_SOLTU; Uncharacterized protein
TrEMBLA0A0D2TMW21e-27A0A0D2TMW2_G
STRINGPGSC0003DMT4000344873e-27(Solanum tuberosum)